| 🗜 | eoe_exhaustive_litreview_bundle.tar.gz | Archive | 1.0 MB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_exhaustive_literature_review.md | Text | 8 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | eoe_evidence_map.png | Figure | 258 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_review_part4_targeted.md | Text | 10 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_review_part3_pmhc.md | Text | 11 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_review_part2_immune_mechanisms.md | Text | 13 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_review_part1_disease.md | Text | 12 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | eoe_master_reference_library.csv | Data | 2.4 MB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | plan_exhaustive-multi-database-eoe-literature_5eff12f3.json | Data | 11 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | plan_systematic-literature-review-grounding-t_5eff12f3.json | Data | 6 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | atopic_march_prevention_review.md | Text | 12 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | atopic_march_prevention.png | Figure | 270 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | index_case_groundtruth_calibration.md | Text | 6 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | index_case_groundtruth_calibration.png | Figure | 180 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_food_trigger_dx_design.md | Text | 14 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | dx_peptide_pool_spec.csv | Data | 512 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | eoe_dx_assay_workflow.png | Figure | 259 KB | Develop a comprehensive project plan for Phase 1 t |
| 🗜 | index_case_deliverables.tar.gz | Archive | 762 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | personalized_therapy_plan_index_case.md | Text | 11 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | index_case_profile.png | Figure | 254 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | patient_target_assessment.csv | Data | 2 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | patient_gwas_annotation.csv | Data | 2 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | patient_allergen_molecule_matrix.csv | Data | 462 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | patient_epitope_panel.csv | Data | 923 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | plan_personalized-pmhc-effector-target-therap_5eff12f3.json | Data | 7 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | plan_personalized-pmhc-therapy-plan-for-an-in_5eff12f3.json | Data | 5 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | validation_extension_note.md | Text | 6 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | mhcnuggets_all_alleles.csv | Data | 1.2 MB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | predictor_concordance.csv | Data | 290 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | patient_epitope_burden_tiers_13.csv | Data | 5 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | allergen_allele_matrix_13.csv | Data | 696 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | hla_allele_burden_13.csv | Data | 632 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | hla_panel_13allele.png | Figure | 190 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | eoe_meta_signature_loco_robust.csv | Data | 22 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | loco_cohort_summary.csv | Data | 348 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | loco_gene_robustness.csv | Data | 32 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | loco_robustness.png | Figure | 165 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_phase4_pmhc_therapy_package.md | Text | 11 KB | Develop a comprehensive project plan for Phase 1 t |
| 🗜 | phase4_deliverables.tar.gz | Archive | 1.1 MB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | preclinical_workflow_roadmap.md | Text | 9 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | t_cell_assay_protocol.md | Text | 29 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | pmhc_tcr_mechanism_review.md | Text | 11 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | epitope_core_matrix.csv | Data | 391 B | Develop a comprehensive project plan for Phase 1 t |
| 📃 | recruitment_stratification_rationale.md | Text | 9 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | patient_epitope_burden_tiers.csv | Data | 851 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | hla_allele_epitope_analysis.csv | Data | 937 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | hla_allele_frequencies.csv | Data | 192 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | epitope_cross_reactivity.csv | Data | 39 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | epitope_uniqueness.csv | Data | 1 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | strong_epitope_binders.csv | Data | 206 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | hla_allele_prediction_summary.csv | Data | 306 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | allergen_epitope_load.csv | Data | 636 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | epitope_load_by_allergen.png | Figure | 117 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | allergen_epitope_heatmap.png | Figure | 166 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | allergen_epitope_panel.csv | Data | 1.1 MB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | allergen_sequences.fasta | Text | 4 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | plan_phase-4-prospective-preclinical-pmhc-tcr_5eff12f3.json | Data | 8 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | food_antigen_pmhc_review.md | Text | 6 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | pmhc_dual_load.csv | Data | 134 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | pmhc_ii_candidates.csv | Data | 89 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | pmhc_dual_axis.png | Figure | 102 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_phase3_report.md | Text | 7 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | revised_design_dossier.csv | Data | 873 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | phase3_summary.png | Figure | 160 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | companion_dx_specs.csv | Data | 1 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | companion_dx.png | Figure | 126 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | antigen_immunogenicity_load.csv | Data | 164 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | immunogenicity_screen.csv | Data | 178 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | developability_screen.png | Figure | 104 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | hlai_delta_bycelltype.csv | Data | 523 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | epi_hlai_ifng_persample.csv | Data | 673 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | pmhc_candidates.csv | Data | 46 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | antigen_presentation_scores.csv | Data | 777 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | antigen_presentation.png | Figure | 184 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | binder_validation_protocol.md | Text | 2 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | CCL26_design_brief.md | Text | 2 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | IL1RL1_design_brief.md | Text | 1 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | SIGLEC6_design_brief.md | Text | 1 KB | Develop a comprehensive project plan for Phase 1 t |
| 🗜 | design_briefs_bundle.tar.gz | Archive | 3 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | binder_design_targets.csv | Data | 606 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | esm_epitope_CCL26.csv | Data | 2 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | esm_epitope_IL1RL1.csv | Data | 8 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | esm_epitope_SIGLEC6.csv | Data | 2 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | developability_liabilities.csv | Data | 650 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | esm_epitope_analysis.png | Figure | 425 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | differentiation_map.csv | Data | 1 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | differentiation_map.png | Figure | 117 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | iface_CCL26.csv | Data | 864 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | iface_SIGLEC6_igv.csv | Data | 1 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | iface_IL1RL1_bsa.csv | Data | 644 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | iface_IL1RL1.csv | Data | 591 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | interface_residues.csv | Data | 355 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | interface_analysis.png | Figure | 168 KB | Develop a comprehensive project plan for Phase 1 t |
| 🧬 | 4KC3_IL33_ST2.pdb | Structure | 596 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | structure_inventory.csv | Data | 607 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | roster_lock.csv | Data | 492 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | roster_structures.png | Figure | 102 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | plan_phase-3-computational-protein-therapeuti_5eff12f3.json | Data | 8 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_phase2_report.md | Text | 7 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | revised_target_dossier.csv | Data | 5 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | phase2_summary.png | Figure | 175 KB | Develop a comprehensive project plan for Phase 1 t |
| 🗜 | design_specs_bundle.tar.gz | Archive | 482 KB | Develop a comprehensive project plan for Phase 1 t |
| 🧬 | AF-IL1RL1-Q01638.pdb | Structure | 368 KB | Develop a comprehensive project plan for Phase 1 t |
| 🧬 | AF-SIGLEC6-O43699.pdb | Structure | 292 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | target_sequences.fasta | Text | 3 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | protein_design_specs.csv | Data | 1 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | protein_design_specs.png | Figure | 142 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | target_biomarker_dossier.csv | Data | 4 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | target_biomarker_dossier.png | Figure | 144 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | confirmation_percohort_de.csv | Data | 4 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | independent_confirmation.csv | Data | 940 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | independent_confirmation.png | Figure | 159 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | novelty_ledger.csv | Data | 5 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | novelty_ledger.png | Figure | 150 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | gwas_target_overlap.csv | Data | 903 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | gwas_overlap.png | Figure | 95 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | gse303169_ppi_labels.csv | Data | 4 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | ppi_target_triage.csv | Data | 2 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | ppi_response_triage.png | Figure | 172 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | target_addressable_by_endotype.csv | Data | 415 B | Develop a comprehensive project plan for Phase 1 t |
| 📈 | patient_endotypes_all.csv | Data | 13 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | endotype_crosscohort.png | Figure | 239 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | mastcell_state_markers.csv | Data | 105 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | mastcell_states.png | Figure | 293 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | liana_gerd.csv | Data | 1.2 MB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | liana_healthy.csv | Data | 1.0 MB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | cellcomm_eoe_vs_gerd.csv | Data | 10 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | differential_cellcomm.png | Figure | 151 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | ifn_module_scores.csv | Data | 2 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | ifn_deconvolution.png | Figure | 484 KB | Develop a comprehensive project plan for Phase 1 t |
| 📎 | epithelial_traj.h5ad external | File | 1.04 GB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | epithelial_pseudotime.csv | Data | 10.8 MB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | trajectory_gene_dynamics.csv | Data | 3 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | epithelial_trajectory.png | Figure | 543 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | plan_phase-2-mechanistic-validation-novelty-g_5eff12f3.json | Data | 10 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | target_patient_positivity.csv | Data | 1 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | gse250595_endotypes.csv | Data | 4 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | heterogeneity_preview.png | Figure | 130 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | SKILL.md | Text | 7 KB | Develop a comprehensive project plan for Phase 1 t |
| 💻 | kernel.py | Code | 4 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | multiomics_support_fullsignature.csv | Data | 1.4 MB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | eoe_phase1_report.md | Text | 10 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | eoe_target_shortlist.csv | Data | 5 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | eoe_phase1_summary.png | Figure | 133 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | target_druggability.csv | Data | 55 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | target_druggability.png | Figure | 165 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | mirna_de_GSE36727.csv | Data | 17 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | multiomics_evidence.csv | Data | 89 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | multiomics_integration.png | Figure | 126 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | liana_eoe.csv | Data | 1.4 MB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | cellcomm_dotplot.png | Figure | 230 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | enrich_tf_up.csv | Data | 483 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | enrich_down.csv | Data | 293 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | enrich_up.csv | Data | 568 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | pathway_enrichment.png | Figure | 142 KB | Develop a comprehensive project plan for Phase 1 t |
| 📎 | gse218607_slim.h5ad external | File | 1.08 GB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | sc_celltype_de.csv | Data | 21 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | sc_composition.csv | Data | 10 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | sc_marker_dotplot.png | Figure | 65 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | sc_composition.png | Figure | 84 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | sc_umap_overview.png | Figure | 1.2 MB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | eoe_meta_signature_highconf.csv | Data | 87 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | eoe_meta_signature.csv | Data | 3.8 MB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | meta_forest_topgenes.png | Figure | 85 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | meta_volcano.png | Figure | 127 KB | Develop a comprehensive project plan for Phase 1 t |
| 🗜 | de_tables_bundle.tar.gz | Archive | 7.1 MB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | de_summary.csv | Data | 279 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | de_concordance.png | Figure | 112 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | de_volcanoes.png | Figure | 499 KB | Develop a comprehensive project plan for Phase 1 t |
| 🗜 | tier1_harmonized_bundle.tar.gz external | Archive | 25.2 MB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | canonical_marker_check.csv | Data | 6 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | bulk_qc_metrics.csv | Data | 380 B | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | canonical_marker_heatmap.png | Figure | 140 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | bulk_qc_panels.png | Figure | 246 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | dataset_prioritization_rationale.md | Text | 4 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | dataset_tiers.png | Figure | 53 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | dataset_tiers.csv | Data | 32 KB | Develop a comprehensive project plan for Phase 1 t |
| 🖼 | dataset_landscape.png | Figure | 104 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | eoe_dataset_inventory.csv | Data | 29 KB | Develop a comprehensive project plan for Phase 1 t |
| 📈 | plan_phase-1-exhaustive-mining-of-public-eoe_5eff12f3.json | Data | 7 KB | Develop a comprehensive project plan for Phase 1 t |
| 📃 | README.md | Text | 3 KB | Publish the omics-target-mining skill using the SK |
| 📎 | LICENSE | File | 1 KB | Publish the omics-target-mining skill using the SK |
| 📃 | requirements.txt | Text | 267 B | Publish the omics-target-mining skill using the SK |
| 🗜 | omics-target-mining-repo.zip | Archive | 9 KB | Publish the omics-target-mining skill using the SK |
| 📃 | peer_review_report_round2.md | Text | 71 KB | Develop a comprehensive methods manuscript detaili |
| 📝 | peer_review_report_round2.docx | Document | 39 KB | Develop a comprehensive methods manuscript detaili |
| 📃 | peer_review_report.md | Text | 64 KB | Develop a comprehensive methods manuscript detaili |
| 📝 | peer_review_report.docx | Document | 38 KB | Develop a comprehensive methods manuscript detaili |
| 📝 | paperE_flagship_manuscript.docx | Document | 3.4 MB | Develop a comprehensive methods manuscript detaili |
| 📃 | paperE_flagship_manuscript.md | Text | 32 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure_preclinical_roadmap.png | Figure | 254 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure_pmhc_epitope.png | Figure | 221 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure_companion_dx.png | Figure | 209 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure1_pipeline_overview.png | Figure | 222 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | flagship_facts.json | Data | 5 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | plan_build-integrated-eoe-translational-flags_073a09d1.json | Data | 5 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | plan_update-paper-d-agentic-workflow-manuscri_073a09d1.json | Data | 5 KB | Develop a comprehensive methods manuscript detaili |
| 📝 | paperB_analyses_manuscript.docx | Document | 2.8 MB | Develop a comprehensive methods manuscript detaili |
| 📃 | paperB_analyses_manuscript.md | Text | 24 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | design_spec_table.csv | Data | 729 B | Develop a comprehensive methods manuscript detaili |
| 🖼 | design_spec_table.png | Figure | 160 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure5_designs.png | Figure | 637 KB | Develop a comprehensive methods manuscript detaili |
| 🧬 | AF-CCL26-Q9Y258.pdb | Structure | 65 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | target_dossier_table.csv | Data | 1 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | target_dossier_table.png | Figure | 230 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure4_target_landscape.png | Figure | 194 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure3_validation.png | Figure | 328 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure2_singlecell.png | Figure | 1.1 MB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure1_discovery.png | Figure | 315 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | paperB_facts.json | Data | 3 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | plan_draft-paper-b-eoe-omics-discovery-valida_073a09d1.json | Data | 6 KB | Develop a comprehensive methods manuscript detaili |
| 📃 | paperD_nature_perspective.md | Text | 30 KB | Develop a comprehensive methods manuscript detaili |
| 📝 | paperD_nature_perspective.docx | Document | 2.0 MB | Develop a comprehensive methods manuscript detaili |
| 📃 | paperD_manuscript_draft.md | Text | 22 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure_panel_paperD.png | Figure | 3.7 MB | Develop a comprehensive methods manuscript detaili |
| 📈 | table3_task_allocation.csv | Data | 803 B | Develop a comprehensive methods manuscript detaili |
| 🖼 | table3_task_allocation.png | Figure | 160 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | table1_campaign_metrics.csv | Data | 1 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | table1_campaign_metrics.png | Figure | 214 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure4_lineage_dag.png | Figure | 625 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure2_operating_model.png | Figure | 255 KB | Develop a comprehensive methods manuscript detaili |
| 📈 | correction_ledger_T2.csv | Data | 2 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure3_correction_ledger.png | Figure | 567 KB | Develop a comprehensive methods manuscript detaili |
| 🖼 | figure1_campaign_schematic.png | Figure | 344 KB | Develop a comprehensive methods manuscript detaili |
| 📃 | paperD_agentic_workflow_outline.md | Text | 11 KB | Develop a comprehensive methods manuscript detaili |
| 🗜 | gut_binder_design_bundle.tar.gz | Archive | 399 KB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_gut_restricted_binder_report.md | Text | 8 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_binder_format_schematic.png | Figure | 207 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_binder_hardening_fig.png | Figure | 144 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_binder_protease_map_fig.png | Figure | 118 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_binder_delivery_spec.json | Data | 4 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_binder_developability_summary.csv | Data | 442 B | Adapt and apply our EoE research framework and met |
| 📈 | celiac_binder_developability.csv | Data | 589 B | Adapt and apply our EoE research framework and met |
| 📃 | celiac_binder_hardened.fasta | Text | 645 B | Adapt and apply our EoE research framework and met |
| 📈 | celiac_binder_hardened.csv | Data | 893 B | Adapt and apply our EoE research framework and met |
| 📈 | celiac_binder_protease_map.csv | Data | 12 KB | Adapt and apply our EoE research framework and met |
| 📈 | plan_re-engineer-the-tier-2-protein-binders-i_9f564fe5.json | Data | 5 KB | Adapt and apply our EoE research framework and met |
| 📃 | gut_restricted_jak_onepager.md | Text | 4 KB | Adapt and apply our EoE research framework and met |
| 🖼 | gut_restricted_jak_schematic.png | Figure | 170 KB | Adapt and apply our EoE research framework and met |
| 🗜 | gut_restricted_review_bundle.tar.gz | Archive | 776 KB | Adapt and apply our EoE research framework and met |
| 📃 | gut_restricted_therapeutics_review.md | Text | 11 KB | Adapt and apply our EoE research framework and met |
| 🖼 | gut_restriction_strategy_taxonomy_fig.png | Figure | 198 KB | Adapt and apply our EoE research framework and met |
| 🖼 | gut_restricted_trial_landscape_fig.png | Figure | 166 KB | Adapt and apply our EoE research framework and met |
| 🖼 | gut_restricted_evidence_map.png | Figure | 219 KB | Adapt and apply our EoE research framework and met |
| 📈 | gut_restriction_strategy_taxonomy.csv | Data | 4 KB | Adapt and apply our EoE research framework and met |
| 📈 | gut_restricted_approved_drugs.csv | Data | 7 KB | Adapt and apply our EoE research framework and met |
| 📈 | gut_restricted_trial_landscape.csv | Data | 102 KB | Adapt and apply our EoE research framework and met |
| 📈 | gut_restricted_master_reference_library.csv | Data | 908 KB | Adapt and apply our EoE research framework and met |
| 📈 | review_scope.json | Data | 3 KB | Adapt and apply our EoE research framework and met |
| 📈 | plan_systematic-landscape-review-of-gut-restr_9f564fe5.json | Data | 6 KB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_tier2_design_report.md | Text | 5 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_design_campaign.png | Figure | 304 KB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_tier2_best_designs.fasta | Text | 631 B | Adapt and apply our EoE research framework and met |
| 📈 | celiac_design_summary.csv | Data | 345 B | Adapt and apply our EoE research framework and met |
| 📈 | il15_binder_designs.csv | Data | 11 KB | Adapt and apply our EoE research framework and met |
| 📈 | mica_decoy_designs.csv | Data | 14 KB | Adapt and apply our EoE research framework and met |
| 🧬 | 4GS7.pdb | Structure | 890 KB | Adapt and apply our EoE research framework and met |
| 🧬 | 1HYR.pdb | Structure | 394 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_design_spec.json | Data | 2 KB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_omics_target_report.md | Text | 12 KB | Adapt and apply our EoE research framework and met |
| 📈 | report_facts_omics.json | Data | 608 B | Adapt and apply our EoE research framework and met |
| 📈 | celiac_target_shortlist_tier2.csv | Data | 3 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_target_shortlist_tier1.csv | Data | 2 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_druggability.png | Figure | 229 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_target_druggability.csv | Data | 15 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_enrichment.png | Figure | 193 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_enrichment.csv | Data | 207 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_sc_validation.png | Figure | 457 KB | Adapt and apply our EoE research framework and met |
| 📎 | celiac_sc_slim.h5ad external | File | 28.5 MB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_sc_ifng_test.csv | Data | 495 B | Adapt and apply our EoE research framework and met |
| 📈 | celiac_sc_composition.csv | Data | 22 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_sc_celltype_expr.csv | Data | 107 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_meta_analysis.png | Figure | 259 KB | Adapt and apply our EoE research framework and met |
| 📈 | de_GSE146190.csv | Data | 3.0 MB | Adapt and apply our EoE research framework and met |
| 📈 | de_GSE164883.csv | Data | 3.3 MB | Adapt and apply our EoE research framework and met |
| 📈 | de_GSE131705.csv | Data | 1.5 MB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_meta_signature.csv | Data | 2.5 MB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_bulk_qc.png | Figure | 225 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_bulk_marker_qc.csv | Data | 4 KB | Adapt and apply our EoE research framework and met |
| 📎 | celiac_bulk_harmonized.pkl external | File | 22.3 MB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_dataset_tiers_rationale.md | Text | 2 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_dataset_tiers.csv | Data | 9 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_dataset_landscape.png | Figure | 153 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_dataset_inventory.csv | Data | 18 KB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_tolerability_rubric.md | Text | 4 KB | Adapt and apply our EoE research framework and met |
| 📄 | fda_celiac_guidance.pdf | PDF | 303 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_patient_preference.csv | Data | 2 KB | Adapt and apply our EoE research framework and met |
| 📈 | plan_mine-celiac-mucosal-omics-for-villi-prot_9f564fe5.json | Data | 7 KB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_pmhc_stream_report.md | Text | 10 KB | Adapt and apply our EoE research framework and met |
| 📈 | report_facts.json | Data | 683 B | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_epitope_map.png | Figure | 209 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_epitope_map.csv | Data | 4 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_epitope_benchmark.png | Figure | 278 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_allele_specificity.csv | Data | 1 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_epitope_benchmark.csv | Data | 2 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_epitope_burden.png | Figure | 375 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_deamidation_shift.csv | Data | 1.5 MB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_epitope_burden.csv | Data | 3 KB | Adapt and apply our EoE research framework and met |
| 📈 | iedb_predictions.json | Data | 8.1 MB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_epitope_panel.csv | Data | 5.1 MB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_deamidation_map.png | Figure | 140 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_deamidation_map.csv | Data | 23 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_known_epitopes.csv | Data | 10 KB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_gluten_antigens.fasta | Text | 8 KB | Adapt and apply our EoE research framework and met |
| 📈 | celiac_gluten_antigen_set.csv | Data | 1 KB | Adapt and apply our EoE research framework and met |
| 📈 | plan_celiac-antigen-epitope-pmhc-pipeline-wit_9f564fe5.json | Data | 6 KB | Adapt and apply our EoE research framework and met |
| 📃 | celiac_transferability_assessment.md | Text | 9 KB | Adapt and apply our EoE research framework and met |
| 🖼 | celiac_transferability_matrix.png | Figure | 275 KB | Adapt and apply our EoE research framework and met |
| 📃 | gpu_stalled_tasks_report.md | Text | 7 KB | Audit all stalled and postponed tasks requiring GP |
| 📈 | gpu_stalled_tasks_costs.csv | Data | 1 KB | Audit all stalled and postponed tasks requiring GP |
| 🖼 | gpu_cost_summary.png | Figure | 153 KB | Audit all stalled and postponed tasks requiring GP |
| 📃 | transcript_review.md | Text | 11 KB | Record a two-minute podcast discussing progress ma |
| 💻 | render.py | Code | 4 KB | Record a two-minute podcast discussing progress ma |
| 📃 | render_brief.md | Text | 2 KB | Record a two-minute podcast discussing progress ma |
| 📃 | transcript.md | Text | 10 KB | Record a two-minute podcast discussing progress ma |
| 📈 | fact_ledger.csv | Data | 30 KB | Record a two-minute podcast discussing progress ma |
| 📈 | script.json | Data | 14 KB | Record a two-minute podcast discussing progress ma |
| 📃 | podcast_transcript.md | Text | 3 KB | Record a two-minute podcast discussing progress ma |
| 🔊 | eoe_hackathon_day2_podcast.wav | Audio | 5.8 MB | Record a two-minute podcast discussing progress ma |
| 🔊 | eoe_hackathon_day2_podcast.mp3 | Audio | 1.6 MB | Record a two-minute podcast discussing progress ma |
| 🖼 | preview3.png | Figure | 336 KB | Develop a skill that guides users through preparin |
| 🖼 | preview2.png | Figure | 353 KB | Develop a skill that guides users through preparin |
| 🖼 | preview1.png | Figure | 318 KB | Develop a skill that guides users through preparin |
| 🖼 | preview0.png | Figure | 360 KB | Develop a skill that guides users through preparin |
| 🖼 | p2_pipeline.png | Figure | 110 KB | Develop a skill that guides users through preparin |
| 🖼 | p2_trials.png | Figure | 36 KB | Develop a skill that guides users through preparin |
| 🖼 | p3_hlai.png | Figure | 52 KB | Develop a skill that guides users through preparin |
| 🖼 | p3_composition.png | Figure | 59 KB | Develop a skill that guides users through preparin |
| 🖼 | p1_trypsin.png | Figure | 40 KB | Develop a skill that guides users through preparin |
| 🖼 | p1_hardening.png | Figure | 53 KB | Develop a skill that guides users through preparin |
| 🖼 | p0_targets.png | Figure | 75 KB | Develop a skill that guides users through preparin |
| 📃 | poster3_eoe_singlecell_speaker_notes.md | Text | 574 B | Develop a skill that guides users through preparin |
| 📃 | poster2_eoe_pipeline_speaker_notes.md | Text | 640 B | Develop a skill that guides users through preparin |
| 📃 | poster1_celiac_binder_speaker_notes.md | Text | 615 B | Develop a skill that guides users through preparin |
| 📃 | poster0_eoe_targets_speaker_notes.md | Text | 644 B | Develop a skill that guides users through preparin |
| 📃 | poster3_eoe_singlecell_legibility.txt | Text | 532 B | Develop a skill that guides users through preparin |
| 📊 | poster3_eoe_singlecell.pptx | Slides | 2.4 MB | Develop a skill that guides users through preparin |
| 📃 | poster2_eoe_pipeline_legibility.txt | Text | 477 B | Develop a skill that guides users through preparin |
| 📊 | poster2_eoe_pipeline.pptx | Slides | 952 KB | Develop a skill that guides users through preparin |
| 📃 | poster1_celiac_binder_legibility.txt | Text | 532 B | Develop a skill that guides users through preparin |
| 📊 | poster1_celiac_binder.pptx | Slides | 669 KB | Develop a skill that guides users through preparin |
| 📃 | poster0_eoe_targets_legibility.txt | Text | 477 B | Develop a skill that guides users through preparin |
| 📊 | poster0_eoe_targets.pptx | Slides | 948 KB | Develop a skill that guides users through preparin |
| 📃 | pmhc_poster_speaker_notes.md | Text | 1 KB | Develop a skill that guides users through preparin |
| 📈 | spec_magazine.json | Data | 7 KB | Develop a skill that guides users through preparin |
| 🖼 | figD_hardening.png | Figure | 56 KB | Develop a skill that guides users through preparin |
| 🖼 | figC_pools.png | Figure | 55 KB | Develop a skill that guides users through preparin |
| 🖼 | figB_alleles.png | Figure | 71 KB | Develop a skill that guides users through preparin |
| 🖼 | figA_dualload.png | Figure | 55 KB | Develop a skill that guides users through preparin |
| 🖼 | pmhc_poster_preview.png | Figure | 409 KB | Develop a skill that guides users through preparin |
| 📃 | pmhc_poster_legibility.txt | Text | 477 B | Develop a skill that guides users through preparin |
| 📊 | pmhc_poster.pptx | Slides | 246 KB | Develop a skill that guides users through preparin |
| 🖼 | poster_preview_justified.png | Figure | 163 KB | Develop a skill that guides users through preparin |
| 📃 | skilltest_poster_speaker_notes.md | Text | 397 B | Develop a skill that guides users through preparin |
| 🖼 | skilltest_preview.png | Figure | 162 KB | Develop a skill that guides users through preparin |
| 📃 | skilltest_poster_legibility.txt | Text | 475 B | Develop a skill that guides users through preparin |
| 📊 | skilltest_poster.pptx | Slides | 90 KB | Develop a skill that guides users through preparin |
| 📝 | EoE_supplementary.docx | Document | 1.3 MB | Identify and plan strategic uses for $200 in API c |
| 📝 | EoE_manuscript.docx | Document | 2.1 MB | Identify and plan strategic uses for $200 in API c |
| 📄 | EoE_supplementary.pdf | PDF | 1.6 MB | Identify and plan strategic uses for $200 in API c |
| 📄 | EoE_manuscript.pdf | PDF | 2.2 MB | Identify and plan strategic uses for $200 in API c |
| 📃 | EoE_supplementary.md | Text | 8 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | TableS5_mpnn_summary.csv | Data | 10 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | TableS4_foldback_validation.csv | Data | 11 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | TableS3_lit_omics_crossref.csv | Data | 4 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | TableS2_druggability_shortlist.csv | Data | 5 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | TableS1_meta_top60.csv | Data | 3 KB | Identify and plan strategic uses for $200 in API c |
| 📃 | EoE_manuscript.md | Text | 22 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | render_postn_close.png | Figure | 553 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | render_ccl26_close.png | Figure | 626 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | fig3_funnel.png | Figure | 85 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | render_postn_still.png | Figure | 420 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | render_ccl26_still.png | Figure | 327 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | fig1_cascade_schematic.png | Figure | 92 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | fig5_leads.png | Figure | 933 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | fig4_validation.png | Figure | 210 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | fig3_pipeline.png | Figure | 244 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | fig2_target_selection.png | Figure | 338 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | fig1_graphical_abstract.png | Figure | 417 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS12_interface_maps.png | Figure | 101 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS11_ontarget_rank.png | Figure | 74 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS10_epitope_coverage.png | Figure | 47 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS9_iptm_plddt.png | Figure | 145 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS8_complexity_filter.png | Figure | 217 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS7_mpnn_scores.png | Figure | 163 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS5_backbone_qc.png | Figure | 85 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS4_shortlist.png | Figure | 89 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS3_sc_dotplot.png | Figure | 85 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS2_concordance.png | Figure | 128 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | figS1_meta_volcano.png | Figure | 211 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | figure_plan.json | Data | 4 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | plan_write-standalone-eoe-de-novo-binder-desi_213e283e.json | Data | 5 KB | Identify and plan strategic uses for $200 in API c |
| 📃 | EoE_binder_design_report.md | Text | 7 KB | Identify and plan strategic uses for $200 in API c |
| 🎬 | POSTN_binder_complex_360.mp4 | Video | 1.9 MB | Identify and plan strategic uses for $200 in API c |
| 🎬 | CCL26_binder_complex_360.mp4 | Video | 1.7 MB | Identify and plan strategic uses for $200 in API c |
| 📃 | lead_spec_sheets.md | Text | 3 KB | Identify and plan strategic uses for $200 in API c |
| 🧬 | POSTN_lead_complex.pdb | Structure | 140 KB | Identify and plan strategic uses for $200 in API c |
| 🧬 | CCL26_lead_complex.pdb | Structure | 93 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | foldback_metrics.png | Figure | 231 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | eoe_binder_validation.csv | Data | 14 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | mpnn_scored.csv | Data | 255 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | postn_qc.csv | Data | 893 B | Identify and plan strategic uses for $200 in API c |
| 📈 | ccl26_qc.csv | Data | 902 B | Identify and plan strategic uses for $200 in API c |
| 🗜 | binder_backbones.tar.gz | Archive | 933 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | target_epitopes.png | Figure | 133 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | target_hotspots.json | Data | 1 KB | Identify and plan strategic uses for $200 in API c |
| 🧬 | postn_target.pdb | Structure | 182 KB | Identify and plan strategic uses for $200 in API c |
| 🧬 | ccl26_target.pdb | Structure | 97 KB | Identify and plan strategic uses for $200 in API c |
| 📃 | eoe_design_rationale.md | Text | 8 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | plan_design-neutralizing-binders-ligand-traps_213e283e.json | Data | 7 KB | Identify and plan strategic uses for $200 in API c |
| 📃 | eoe_crossref_report.md | Text | 8 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | eoe_lit_vs_omics_concordance.png | Figure | 189 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | eoe_crossref_lit_vs_omics.csv | Data | 4 KB | Identify and plan strategic uses for $200 in API c |
| 📃 | eoe_target_report.md | Text | 5 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | eoe_pipeline_summary.png | Figure | 119 KB | Identify and plan strategic uses for $200 in API c |
| 🖼 | eoe_target_landscape.png | Figure | 151 KB | Identify and plan strategic uses for $200 in API c |
| 📈 | eoe_target_gap_table.csv | Data | 1 KB | Identify and plan strategic uses for $200 in API c |
| 📃 | WEBSITE_DEPLOYMENT_SUMMARY.md | Text | 8 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | DEPLOYMENT_GUIDE.md | Text | 5 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🗜 | eoe_program_website_deployment.zip | Archive | 28 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | FINAL_DELIVERABLES_SUMMARY.md | Text | 19 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | EoE_Commercial_Strategy.md | Text | 30 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | EoE_FINAL_INTEGRATED_BUSINESS_SCIENTIFIC_REPORT.md | Text | 31 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📄 | EoE_FINAL_INTEGRATED_BUSINESS_SCIENTIFIC_REPORT.pdf | PDF | 15 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | plan_generate-integrated-business-plan-and-sc_6cacb9ff.json | Data | 5 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | DELIVERABLES_FINAL_SUMMARY.txt | Text | 10 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | MANUSCRIPT_PACKAGE_SUMMARY.txt | Text | 13 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | Figure3_NP_Architecture.png | Figure | 268 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | Figure1_Epitope_Discovery.png | Figure | 226 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📝 | EoE_Reviewer_Comments_and_Responses.docx | Document | 44 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📝 | EoE_Final_Manuscript_Supplemental.docx | Document | 41 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📝 | EoE_Final_Manuscript_Main.docx | Document | 680 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | PRESENTATION_GUIDE_WITH_GRAPHICS.txt | Text | 24 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📊 | EoE_pMHC_Biotech_Pitch_Deck.pptx | Slides | 62 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | VISUALIZATION_ASSETS_CORRECTED.txt | Text | 2 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | BIOTECH_PITCH_DECK_GUIDE.txt | Text | 22 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📎 | EoE_pMHC_Biotech_Pitch_Viewer.html | File | 13 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | eoe_preclinical_roadmap_timeline.png | Figure | 145 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | eoe_np_platform_architecture.png | Figure | 286 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | eoe_pmhc_biotech_clip_soy.png | Figure | 245 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | eoe_pmhc_biotech_clip_wheat.png | Figure | 254 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | eoe_pmhc_biotech_clip_dairy.png | Figure | 243 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | REVISION_SUMMARY.txt | Text | 10 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📝 | EoE_pMHC_Therapeutics_Science_Manuscript_Revised.docx | Document | 43 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | IP_ATTRIBUTION_FRAMEWORK.txt | Text | 19 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📝 | EoE_pMHC_Therapeutics_Science_Manuscript.docx | Document | 43 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | FINAL_SUMMARY.txt | Text | 10 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | SCIENCE_MANUSCRIPT_SUBMISSION_INDEX.md | Text | 16 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | figure3_nanoparticle_architecture.png | Figure | 363 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | figure2_structural_validation.png | Figure | 262 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | figure1_design_strategy.png | Figure | 252 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | table5_risk_assessment.csv | Data | 1 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | table4_preclinical_roadmap.csv | Data | 1 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | table3_nanoparticle_specs.csv | Data | 1 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | table2_structural_metrics.csv | Data | 708 B | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | table1_epitope_selection.csv | Data | 700 B | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | Science_manuscript_eoe_pmhc_therapeutics.txt | Text | 29 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | action_plan_12_months.md | Text | 9 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | peer_review_synthesis.md | Text | 16 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | FINAL_PEER_REVIEW_REPORT.md | Text | 34 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | risk_feasibility_matrix.csv | Data | 7 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | plan_structured-peer-review-with-technical-bi_6cacb9ff.json | Data | 4 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | DELIVERABLES_INDEX.md | Text | 14 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | eoe_pmhc_hackathon_final_summary.md | Text | 15 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | eoe_pmhc_preclinical_roadmap.md | Text | 29 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | eoe_pmhc_optimization_report.md | Text | 15 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | eoe_pmhc_nanoparticle_assembly_scenarios.csv | Data | 465 B | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | eoe_pmhc_nanoparticle_fusion_architecture.csv | Data | 1 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | eoe_pmhc_nanoparticle_assembly_model.png | Figure | 248 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | plan_sequence-optimization-and-nanoparticle-s_6cacb9ff.json | Data | 3 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | eoe_pmhc_therapeutic_report.md | Text | 10 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🗜 | eoe_pmhc_therapeutic_bundle.tar.gz | Archive | 634 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🖼 | eoe_pmhc_strategy_figure.png | Figure | 418 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | eoe_pmhc_foldback_metrics.csv | Data | 248 B | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🧬 | dairy_singlechain.pdb | Structure | 288 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🧬 | soy_pmhc.pdb | Structure | 271 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🧬 | wheat_pmhc.pdb | Structure | 272 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 🧬 | dairy_pmhc.pdb | Structure | 272 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | eoe_pmhc_construct_spec.csv | Data | 1 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📃 | eoe_pmhc_constructs.fasta | Text | 5 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | eoe_pmhc_therapeutic_cores.csv | Data | 527 B | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📈 | plan_design-and-visualize-eoe-pmhc-tolerance_6cacb9ff.json | Data | 4 KB | Design peptide-MHC (pMHC) therapeutic candidates t |
| 📝 | decoy_control_memo.docx | Document | 40 KB | Execute synthetic peer-review process on EoE de no |
| 📝 | response_to_reviewers.docx | Document | 39 KB | Execute synthetic peer-review process on EoE de no |
| 📝 | EoE_supplementary_revised.docx | Document | 1.6 MB | Execute synthetic peer-review process on EoE de no |
| 📝 | EoE_manuscript_revised.docx | Document | 2.3 MB | Execute synthetic peer-review process on EoE de no |
| 📃 | response_to_reviewers.md | Text | 5 KB | Execute synthetic peer-review process on EoE de no |
| 📃 | EoE_supplementary_revised.md | Text | 11 KB | Execute synthetic peer-review process on EoE de no |
| 📃 | EoE_manuscript_revised.md | Text | 37 KB | Execute synthetic peer-review process on EoE de no |
| 📈 | TableS6_concordance_and_controls.csv | Data | 8 KB | Execute synthetic peer-review process on EoE de no |
| 📈 | chai_boltz_concordance.csv | Data | 16 KB | Execute synthetic peer-review process on EoE de no |
| 🖼 | chai_concordance.png | Figure | 96 KB | Execute synthetic peer-review process on EoE de no |
| 📃 | decoy_control_memo.md | Text | 7 KB | Execute synthetic peer-review process on EoE de no |
| 📈 | decoy_control_spec.csv | Data | 5 KB | Execute synthetic peer-review process on EoE de no |
| 📈 | decoy_control_results.csv | Data | 8 KB | Execute synthetic peer-review process on EoE de no |
| 🖼 | decoy_calibration.png | Figure | 111 KB | Execute synthetic peer-review process on EoE de no |
| 📃 | revision_plan.md | Text | 11 KB | Execute synthetic peer-review process on EoE de no |
| 📃 | peer_review_report.md | Text | 59 KB | Execute synthetic peer-review process on EoE de no |
| 📝 | peer_review_report.docx | Document | 36 KB | Execute synthetic peer-review process on EoE de no |
| 📝 | EoE_hackathon_notice_AI_Research_Lead.docx | Document | 38 KB | Draft and send a professional heads-up message to |
| 📝 | EoE_hackathon_notice_Legal.docx | Document | 38 KB | Draft and send a professional heads-up message to |
| 📃 | market_access_strategy.md | Text | 6 KB | Establish biotech company name, brand identity, an |
| 🖼 | market_access.png | Figure | 269 KB | Establish biotech company name, brand identity, an |
| 📃 | README_fundraising_bundle.md | Text | 3 KB | Establish biotech company name, brand identity, an |
| 📃 | executive_onepager.md | Text | 3 KB | Establish biotech company name, brand identity, an |
| 🗜 | company_launch_bundle.tar.gz | Archive | 5.4 MB | Establish biotech company name, brand identity, an |
| 📎 | Tolera_Bio_VC_Pitch_Viewer.html | File | 2.6 MB | Establish biotech company name, brand identity, an |
| 📊 | Tolera_Bio_VC_Pitch_Deck.pptx | Slides | 2.1 MB | Establish biotech company name, brand identity, an |
| 📃 | financial_model.md | Text | 4 KB | Establish biotech company name, brand identity, an |
| 🖼 | milestone_timeline.png | Figure | 144 KB | Establish biotech company name, brand identity, an |
| 🖼 | use_of_proceeds.png | Figure | 131 KB | Establish biotech company name, brand identity, an |
| 📈 | milestones.csv | Data | 641 B | Establish biotech company name, brand identity, an |
| 📈 | financial_model.csv | Data | 758 B | Establish biotech company name, brand identity, an |
| 📃 | market_analysis.md | Text | 5 KB | Establish biotech company name, brand identity, an |
| 🖼 | market_analysis.png | Figure | 189 KB | Establish biotech company name, brand identity, an |
| 📈 | cost_of_care_10yr.csv | Data | 236 B | Establish biotech company name, brand identity, an |
| 📈 | market_model.csv | Data | 195 B | Establish biotech company name, brand identity, an |
| 📃 | regulatory_strategy.md | Text | 11 KB | Establish biotech company name, brand identity, an |
| 🖼 | regulatory_timeline.png | Figure | 121 KB | Establish biotech company name, brand identity, an |
| 🖼 | population_coverage.png | Figure | 201 KB | Establish biotech company name, brand identity, an |
| 📈 | coverage_analysis.csv | Data | 2 KB | Establish biotech company name, brand identity, an |
| 📃 | platform_spec.md | Text | 5 KB | Establish biotech company name, brand identity, an |
| 🖼 | personalization_decision_tree.png | Figure | 174 KB | Establish biotech company name, brand identity, an |
| 🖼 | platform_architecture.png | Figure | 193 KB | Establish biotech company name, brand identity, an |
| 📃 | company_brand_brief.md | Text | 6 KB | Establish biotech company name, brand identity, an |
| 🖼 | brand_hero.png | Figure | 130 KB | Establish biotech company name, brand identity, an |
| 📈 | plan_build-the-company-platform-and-regulator_ccdd12cf.json | Data | 7 KB | Establish biotech company name, brand identity, an |
| 🧬 | soy_singlechain.pdb | Structure | 287 KB | Add wheat PDB file references to Blender and Chime |
| 🧬 | wheat_singlechain.pdb | Structure | 288 KB | Add wheat PDB file references to Blender and Chime |
| 🧬 | dairy_tetramer.pdb | Structure | 1.4 MB | Add wheat PDB file references to Blender and Chime |
| 🧬 | streptavidin_core.pdb | Structure | 310 KB | Add wheat PDB file references to Blender and Chime |
| 📎 | pmhc_delivery_formats.cxc | File | 6 KB | Add wheat PDB file references to Blender and Chime |
| 💻 | tcell_threefate_scene_v3_cycles.py | Code | 33 KB | Add wheat PDB file references to Blender and Chime |
| 📃 | modal_blender_render_recipe.md | Text | 4 KB | Resolve IndentationError in Blender console script |
| 💻 | render_range.py | Code | 2 KB | Resolve IndentationError in Blender console script |
| 🖼 | still_420_end.png | Figure | 1.8 MB | Resolve IndentationError in Blender console script |
| 🖼 | still_300_resolving.png | Figure | 1.8 MB | Resolve IndentationError in Blender console script |
| 🖼 | still_120_docked.png | Figure | 1.7 MB | Resolve IndentationError in Blender console script |
| 🖼 | still_001_start.png | Figure | 1.7 MB | Resolve IndentationError in Blender console script |
| 🎬 | tcell_threefate_animation.mp4 | Video | 3.2 MB | Resolve IndentationError in Blender console script |
| 🖼 | qc_frame_0360_labelfix.png | Figure | 2.1 MB | Resolve IndentationError in Blender console script |
| 📎 | tcell_threefate_scene_labelfix.blend | File | 1.1 MB | Resolve IndentationError in Blender console script |
| 📎 | tcell_threefate_scene.blend | File | 1.1 MB | Resolve IndentationError in Blender console script |
| 📈 | plan_render-the-t-cell-three-fate-animation-o_a7a47f15.json | Data | 5 KB | Resolve IndentationError in Blender console script |
| 💻 | mn_style_helper.py | Code | 24 KB | Resolve IndentationError in Blender console script |
| 🖼 | eosinophil_cartoon.png | Figure | 80 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | eoe_survey_plan.md | Text | 17 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | appendix_trials.md | Text | 12 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | glossary.md | Text | 7 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | eoe_journey.md | Text | 5 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | eoe_pipeline.md | Text | 7 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | regulatory.md | Text | 9 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | market_context.md | Text | 6 KB | Conduct a comprehensive 100+ page market report on |
| 📎 | pmhc_landscape_report.html | File | 1.1 MB | Conduct a comprehensive 100+ page market report on |
| 📄 | pmhc_landscape_report.pdf | PDF | 1.6 MB | Conduct a comprehensive 100+ page market report on |
| 📃 | synthesis_eoe.md | Text | 6 KB | Conduct a comprehensive 100+ page market report on |
| 🖼 | fig_landscape_matrix.png | Figure | 104 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | pfdd_timeline.md | Text | 5 KB | Conduct a comprehensive 100+ page market report on |
| 📈 | pfdd_inventory.csv | Data | 2 KB | Conduct a comprehensive 100+ page market report on |
| 🖼 | fig_pfdd_timing.png | Figure | 95 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | patient_voice.md | Text | 7 KB | Conduct a comprehensive 100+ page market report on |
| 📈 | pro_instruments.csv | Data | 2 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | tzield_postmarket.md | Text | 6 KB | Conduct a comprehensive 100+ page market report on |
| 🖼 | fig_tzield_timeline.png | Figure | 107 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | outcomes_analysis.md | Text | 9 KB | Conduct a comprehensive 100+ page market report on |
| 📈 | outcomes_matrix.csv | Data | 2 KB | Conduct a comprehensive 100+ page market report on |
| 🖼 | fig_outcomes_matrix.png | Figure | 159 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | origins_preclinical.md | Text | 13 KB | Conduct a comprehensive 100+ page market report on |
| 📈 | citation_library_final.json | Data | 4 KB | Conduct a comprehensive 100+ page market report on |
| 📈 | trials_master.csv | Data | 47 KB | Conduct a comprehensive 100+ page market report on |
| 🖼 | fig_trial_timeline.png | Figure | 76 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | report_outline.md | Text | 8 KB | Conduct a comprehensive 100+ page market report on |
| 📈 | program_roster.csv | Data | 3 KB | Conduct a comprehensive 100+ page market report on |
| 📈 | plan_patient-centered-pmhc-antigen-specific-i_3840a12c.json | Data | 8 KB | Conduct a comprehensive 100+ page market report on |
| 📃 | EoE_linkedin_post.md | Text | 4 KB | Create a 5-minute survey on EoE patient experience |
| 📃 | EoE_survey_distribution.md | Text | 2 KB | Create a 5-minute survey on EoE patient experience |
| 💻 | build_EoE_form.gs | Code | 6 KB | Create a 5-minute survey on EoE patient experience |
| 📃 | EoE_tolerizing_vaccine_survey.md | Text | 4 KB | Create a 5-minute survey on EoE patient experience |
| 🗜 | patient-centered-market-and-survey-skill.tar.gz | Archive | 32 KB | Develop and publish a reusable skill to GitHub for |
| 📊 | Project_Tolera_Roadmap.pptx | Slides | 2.5 MB | Integrate insights from the patient-centered marke |
| 📃 | teaser_onepager.md | Text | 4 KB | Integrate insights from the patient-centered marke |
| 📄 | teaser_onepager.pdf | PDF | 42 KB | Integrate insights from the patient-centered marke |
| 📊 | Tolera_Bio_VC_Pitch_Deck_v2.pptx | Slides | 2.5 MB | Integrate insights from the patient-centered marke |
| 📄 | scientific_plan.pdf | PDF | 461 KB | Integrate insights from the patient-centered marke |
| 📄 | business_plan.pdf | PDF | 2.4 MB | Integrate insights from the patient-centered marke |
| 📃 | scientific_plan.md | Text | 18 KB | Integrate insights from the patient-centered marke |
| 📃 | business_plan.md | Text | 27 KB | Integrate insights from the patient-centered marke |
| 🖼 | fig_market_v2.png | Figure | 196 KB | Integrate insights from the patient-centered marke |
| 🖼 | fig_scientific_roadmap.png | Figure | 378 KB | Integrate insights from the patient-centered marke |
| 🖼 | fig_payer_value.png | Figure | 347 KB | Integrate insights from the patient-centered marke |
| 🖼 | fig_whitespace.png | Figure | 199 KB | Integrate insights from the patient-centered marke |
| 🖼 | fig_patient_priorities.png | Figure | 346 KB | Integrate insights from the patient-centered marke |
| 📈 | number_reconciliation.csv | Data | 975 B | Integrate insights from the patient-centered marke |
| 📈 | plan_fresh-pitch-deck-business-plan-and-ai-to_2710584a.json | Data | 6 KB | Integrate insights from the patient-centered marke |
| 📈 | manuscript_references.csv | Data | 3 KB | Update the "Rational design of multivalent nanopar |
| 📝 | EoE_manuscript_personalized_supplemental.docx | Document | 42 KB | Update the "Rational design of multivalent nanopar |
| 📃 | manuscript_changelog.md | Text | 9 KB | Update the "Rational design of multivalent nanopar |
| 📃 | EoE_manuscript_personalized.md | Text | 28 KB | Update the "Rational design of multivalent nanopar |
| 📝 | EoE_manuscript_personalized.docx | Document | 827 KB | Update the "Rational design of multivalent nanopar |
| 📈 | pmhc_ii_candidates_msw.csv | Data | 390 KB | Update the "Rational design of multivalent nanopar |
| 🖼 | fig_personalization_engine.png | Figure | 254 KB | Update the "Rational design of multivalent nanopar |
| 📈 | manuscript_reconciliation.csv | Data | 5 KB | Update the "Rational design of multivalent nanopar |
| 📈 | plan_reposition-the-eoe-pmhc-ii-manuscript-ar_cc781c80.json | Data | 5 KB | Update the "Rational design of multivalent nanopar |
| 🖼 | gfx_vaccine.png | Figure | 118 KB | Create a bare bones slide deck walking through the |
| 🖼 | gfx_burden.png | Figure | 236 KB | Create a bare bones slide deck walking through the |
| 🖼 | dk2_eosinophil.png | Figure | 67 KB | Create a bare bones slide deck walking through the |
| 🖼 | dk2_hero.png | Figure | 117 KB | Create a bare bones slide deck walking through the |
| 🖼 | dk2_funnel.png | Figure | 123 KB | Create a bare bones slide deck walking through the |
| 🖼 | dk2_roadmap.png | Figure | 242 KB | Create a bare bones slide deck walking through the |
| 🖼 | dk2_landscape.png | Figure | 170 KB | Create a bare bones slide deck walking through the |
| 🖼 | dk2_volcano.png | Figure | 195 KB | Create a bare bones slide deck walking through the |
| 🖼 | gfx_specialist.png | Figure | 135 KB | Create a bare bones slide deck walking through the |
| 🖼 | index.png | Figure | 871 KB | Create a bare bones slide deck walking through the |
| 🎬 | site_walkthrough.mp4 external | Video | 43.1 MB | Create a bare bones slide deck walking through the |
| 🖼 | gfx_scale.png | Figure | 199 KB | Create a bare bones slide deck walking through the |
| 🖼 | gfx_design.png | Figure | 137 KB | Create a bare bones slide deck walking through the |
| 🖼 | gfx_triad.png | Figure | 137 KB | Create a bare bones slide deck walking through the |
| 📊 | Tolera_hackathon_video_deck.pptx external | Slides | 50.3 MB | Create a bare bones slide deck walking through the |
| 📃 | dryrun_SMA_genetic.md | Text | 3 KB | Build a generalizable Claude Science tool that aut |
| 📃 | genetic_modality_tree.md | Text | 3 KB | Build a generalizable Claude Science tool that aut |
| 📈 | genetic_modality_tree.csv | Data | 3 KB | Build a generalizable Claude Science tool that aut |
| 📈 | plan_make-the-drug-program-pipeline-archetype_440da737.json | Data | 5 KB | Build a generalizable Claude Science tool that aut |
| 📃 | orchestration_readme.md | Text | 5 KB | Build a generalizable Claude Science tool that aut |
| 📃 | dryrun_IPF.md | Text | 3 KB | Build a generalizable Claude Science tool that aut |
| 📃 | SKILL.md | Text | 14 KB | Build a generalizable Claude Science tool that aut |
| 📃 | program_summary_template.md | Text | 1 KB | Build a generalizable Claude Science tool that aut |
| 📃 | scientific_plan_template.md | Text | 3 KB | Build a generalizable Claude Science tool that aut |
| 📈 | target_modality_rubric.csv | Data | 1 KB | Build a generalizable Claude Science tool that aut |
| 💻 | kernel.py | Code | 31 KB | Build a generalizable Claude Science tool that aut |
| 📃 | checkpoint_protocol.md | Text | 9 KB | Build a generalizable Claude Science tool that aut |
| 📈 | program_dossier.schema.json | Data | 6 KB | Build a generalizable Claude Science tool that aut |
| 📃 | stage_spec.md | Text | 24 KB | Build a generalizable Claude Science tool that aut |
| 📈 | checkpoint_map.csv | Data | 4 KB | Build a generalizable Claude Science tool that aut |
| 📈 | plan_build-a-disease-agnostic-drug-program-or_440da737.json | Data | 5 KB | Build a generalizable Claude Science tool that aut |
| 📃 | market_analysis.md | Text | 5 KB | Create a central website that showcases hackathon |
| 📃 | README.md | Text | 2 KB | Create a central website that showcases hackathon |
| 📎 | about.html | File | 9 KB | Create a central website that showcases hackathon |
| 📎 | biotech.html | File | 22 KB | Create a central website that showcases hackathon |
| 📎 | manuscripts.html | File | 14 KB | Create a central website that showcases hackathon |
| 📎 | specialist.html | File | 12 KB | Create a central website that showcases hackathon |
| 📎 | software.html | File | 14 KB | Create a central website that showcases hackathon |
| 📎 | index.html | File | 11 KB | Create a central website that showcases hackathon |
| 🗜 | ruthannepai-site.zip | Archive | 7.8 MB | Create a central website that showcases hackathon |
| 📈 | asset_manifest.csv | Data | 5 KB | Create a central website that showcases hackathon |
| 💻 | pages.py | Code | 77 KB | Create a central website that showcases hackathon |
| 💻 | build.py | Code | 5 KB | Create a central website that showcases hackathon |
| 📎 | style.css | File | 18 KB | Create a central website that showcases hackathon |
| 📈 | plan_build-a-static-multi-page-website-showca_545c5625.json | Data | 6 KB | Create a central website that showcases hackathon |
| 📃 | FINAL_program_deliverable.md | Text | 5 KB | Execute the drug program pipeline for esophageal c |
| 📃 | commercial_financing_brief.md | Text | 4 KB | Execute the drug program pipeline for esophageal c |
| 📃 | regulatory_brief.md | Text | 4 KB | Execute the drug program pipeline for esophageal c |
| 📃 | scientific_development_plan.md | Text | 9 KB | Execute the drug program pipeline for esophageal c |
| 🧬 | dkk1_bb1_complex.pdb | Structure | 91 KB | Execute the drug program pipeline for esophageal c |
| 🧬 | gucy2c_bb2_complex.pdb | Structure | 301 KB | Execute the drug program pipeline for esophageal c |
| 📈 | design_leads.csv | Data | 2 KB | Execute the drug program pipeline for esophageal c |
| 🖼 | design_results.png | Figure | 180 KB | Execute the drug program pipeline for esophageal c |
| 📈 | target_nomination.csv | Data | 4 KB | Execute the drug program pipeline for esophageal c |
| 🖼 | target_nomination.png | Figure | 155 KB | Execute the drug program pipeline for esophageal c |
| 📈 | competitive_landscape.csv | Data | 2 KB | Execute the drug program pipeline for esophageal c |
| 🖼 | eac_whitespace_map.png | Figure | 174 KB | Execute the drug program pipeline for esophageal c |
| 📃 | patient_priorities_brief.md | Text | 4 KB | Execute the drug program pipeline for esophageal c |
| 📈 | program_dossier.json | Data | 21 KB | Execute the drug program pipeline for esophageal c |
| 🖼 | eac_driver_landscape.png | Figure | 96 KB | Execute the drug program pipeline for esophageal c |
| 📈 | plan_end-to-end-drug-program-for-esophageal-a_d913017f.json | Data | 6 KB | Execute the drug program pipeline for esophageal c |
| 📝 | peer_review_report.docx | Document | 68 KB | Execute the manuscript specialist tool on the EAC |
| 📝 | manuscript_and_supplements.docx | Document | 761 KB | Execute the manuscript specialist tool on the EAC |
| 📝 | lay_abstract.docx | Document | 12 KB | Execute the manuscript specialist tool on the EAC |
| 📝 | executive_summary.docx | Document | 13 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | README.md | Text | 3 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | peer_review_report_combined.md | Text | 142 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | lay_abstract.md | Text | 2 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | executive_summary.md | Text | 4 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | response_to_reviewers_round2.md | Text | 4 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | figure_legends_v3.md | Text | 4 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | manuscript_v3.md | Text | 30 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | peer_review_round2.md | Text | 69 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | response_to_reviewers_round1.md | Text | 6 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | supplementary_information_v2.md | Text | 22 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | manuscript_v2.md | Text | 28 KB | Execute the manuscript specialist tool on the EAC |
| 📈 | S5_binder_liabilities.csv | Data | 821 B | Execute the manuscript specialist tool on the EAC |
| 📈 | S4_gtex_selectivity.csv | Data | 642 B | Execute the manuscript specialist tool on the EAC |
| 🖼 | figureS1_gtex.png | Figure | 154 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | peer_review_round1.md | Text | 58 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | figure_legends.md | Text | 3 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | supplementary_information.md | Text | 13 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | manuscript.md | Text | 21 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | manuscript_v1.md | Text | 57 KB | Execute the manuscript specialist tool on the EAC |
| 📈 | S3_competitive_landscape.csv | Data | 2 KB | Execute the manuscript specialist tool on the EAC |
| 📈 | S2_target_nomination.csv | Data | 2 KB | Execute the manuscript specialist tool on the EAC |
| 📈 | S1_binder_designs.csv | Data | 2 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | references.md | Text | 2 KB | Execute the manuscript specialist tool on the EAC |
| 📈 | claims_to_sources.csv | Data | 2 KB | Execute the manuscript specialist tool on the EAC |
| 🖼 | figure4.png | Figure | 195 KB | Execute the manuscript specialist tool on the EAC |
| 🖼 | figure3.png | Figure | 180 KB | Execute the manuscript specialist tool on the EAC |
| 🖼 | figure2.png | Figure | 108 KB | Execute the manuscript specialist tool on the EAC |
| 🖼 | figure1.png | Figure | 174 KB | Execute the manuscript specialist tool on the EAC |
| 📃 | manuscript_outline.md | Text | 4 KB | Execute the manuscript specialist tool on the EAC |
| 📈 | plan_turn-the-eac-dual-arm-drug-program-into_3d43be4f.json | Data | 6 KB | Execute the manuscript specialist tool on the EAC |
| 🗜 | eoe-protein-design-skills.tar.gz | Archive | 25 KB | Review completed work across therapeutics, softwar |
| 📃 | reconstruction_notes.md | Text | 7 KB | Review completed work across therapeutics, softwar |
| 📈 | plan_author-5-skills-1-specialist-from-the-eo_f387d4c7.json | Data | 6 KB | Review completed work across therapeutics, softwar |
| 📃 | exec_summary_pMHC_nanoparticle.md | Text | 3 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📃 | exec_summary_pMHC_personalized.md | Text | 4 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📃 | exec_summary_CCL26_POSTN.md | Text | 4 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📝 | exec_summary_pMHC_nanoparticle.docx | Document | 38 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📝 | exec_summary_pMHC_personalized.docx | Document | 39 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📝 | exec_summary_CCL26_POSTN.docx | Document | 39 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📝 | lay_summary_pMHC_nanoparticle.docx | Document | 38 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📝 | lay_summary_pMHC_personalized.docx | Document | 38 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📝 | lay_summary_CCL26_POSTN.docx | Document | 38 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📃 | lay_summary_pMHC_nanoparticle.md | Text | 3 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📃 | lay_summary_pMHC_personalized.md | Text | 3 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📃 | lay_summary_CCL26_POSTN.md | Text | 3 KB | Develop a lay summary for the CCL26/POSTN manuscri |
| 📄 | Project_Tolera_Pitch_Deck.pdf | PDF | 4.6 MB | Review and refine the 3 hackathon manuscripts for |
| 🖼 | eoe_burden_infographic.png | Figure | 210 KB | Review and refine the 3 hackathon manuscripts for |
| 💻 | build.py | Code | 7 KB | Review and refine the 3 hackathon manuscripts for |
| 📄 | EAC_Manuscript.pdf | PDF | 958 KB | Review and refine the 3 hackathon manuscripts for |
| 📄 | CCL26_POSTN_Manuscript.pdf | PDF | 3.3 MB | Review and refine the 3 hackathon manuscripts for |
| 📄 | EoE_pMHC_Manuscript_Supplemental.pdf | PDF | 2.8 MB | Review and refine the 3 hackathon manuscripts for |
| 📄 | EoE_pMHC_Manuscript.pdf | PDF | 2.0 MB | Review and refine the 3 hackathon manuscripts for |
| 📃 | final_package_review.md | Text | 6 KB | Review and refine the 3 hackathon manuscripts for |
| 📃 | prize_submission_revised.md | Text | 5 KB | Review and refine the 3 hackathon manuscripts for |
| 📃 | prize_submission_revised.txt | Text | 4 KB | Review and refine the 3 hackathon manuscripts for |
| 📃 | deck_talking_points.md | Text | 5 KB | Review and refine the 3 hackathon manuscripts for |
| 📊 | Project_Tolera_Deck__revised.pptx | Slides | 5.7 MB | Review and refine the 3 hackathon manuscripts for |
| 📃 | website_rebuild_report.md | Text | 5 KB | Review and refine the 3 hackathon manuscripts for |
| 🗜 | project_tolera_site.zip external | Archive | 22.5 MB | Review and refine the 3 hackathon manuscripts for |
| 📃 | manuscript_consistency_report.md | Text | 4 KB | Review and refine the 3 hackathon manuscripts for |
| 📝 | lay_summary_CCL26_POSTN_corrected.docx | Document | 38 KB | Review and refine the 3 hackathon manuscripts for |
| 📝 | EAC_manuscript_harmonized.docx | Document | 762 KB | Review and refine the 3 hackathon manuscripts for |
| 📝 | CCL26_manuscript_harmonized.docx | Document | 2.0 MB | Review and refine the 3 hackathon manuscripts for |
| 📝 | pMHC_manuscript_harmonized.docx | Document | 458 KB | Review and refine the 3 hackathon manuscripts for |
| 📃 | accomplishments_ledger.md | Text | 7 KB | Review and refine the 3 hackathon manuscripts for |
| 📈 | accomplishments_ledger.csv | Data | 6 KB | Review and refine the 3 hackathon manuscripts for |
| 📃 | consistency_decisions.md | Text | 4 KB | Review and refine the 3 hackathon manuscripts for |
| 📈 | plan_finalize-the-project-tolera-hackathon-pa_39ed3738.json | Data | 8 KB | Review and refine the 3 hackathon manuscripts for |
| 📄 | EoE_Integrated_Business_Scientific_Report.pdf | PDF | 39 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📎 | style.css | File | 19 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📎 | platform.html | File | 16 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | anydisease_pipeline_dark.png | Figure | 94 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | anydisease_pipeline_light.png | Figure | 95 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | tolera_pipeline_dark.png | Figure | 99 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | tolera_pipeline_light.png | Figure | 100 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📎 | cancer.html | File | 15 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📄 | Tolera_Reprogramming_Target_Report.pdf | PDF | 1.4 MB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📃 | eoe_program_strategy_assessment.md | Text | 16 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | program_verdicts.json | Data | 3 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📃 | eoe_reprogramming_target_brief.md | Text | 12 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | programB_heatmap.png | Figure | 219 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | programA_heatmap.png | Figure | 183 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | fig5_druggability.png | Figure | 187 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | uniprot_localization_top.csv | Data | 24 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | target_druggability_classification.csv | Data | 77 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | fig4_integration.png | Figure | 332 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | candidates_annotated.csv | Data | 57 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | fig3_programB_amenability.png | Figure | 424 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | programB_consolidated_full.csv | Data | 1.5 MB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | programB_tolerance_amenability_cotargets.csv | Data | 30 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | fig2_programA_dampeners.png | Figure | 264 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | programA_consolidated_full.csv | Data | 1.4 MB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | programA_th2_dampening_targets.csv | Data | 9 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🖼 | fig1_readout_coverage.png | Figure | 247 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📎 | de_readout_long.parquet external | File | 58.9 MB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | de_qc_summary.csv | Data | 214 B | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | reprogramming_panels.csv | Data | 2 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | plan_mine-cd4-t-cell-perturb-seq-for-eoe-t-ce_6172abf0.json | Data | 6 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 📈 | plan_mine-cd4-t-cell-perturb-seq-for-eoe-th2_6172abf0.json | Data | 5 KB | Explore the genome-scale CD4+ T cell perturbseq da |
| 🎬 | site_pages.mp4 | Video | 1.2 MB | Create a short video that automatically displays e |
| 📈 | plan_build-a-standalone-browsable-archive-sit_9b44315d.json | Data | 4 KB | Create a shareable file/archive containing importa |
| 📄 | Tolera_Reprogramming_Target_Report (2).pdf | PDF | 1.4 MB | User Uploads |
| 📊 | Tolera_hackathon_video_deck (3) (2).pptx | Slides | 5.7 MB | User Uploads |
| 📄 | Tolera_hackathon_video_deck (3) (1).pdf | PDF | 2.1 MB | User Uploads |
| 🔊 | audio1988269321.m4a | Audio | 4.2 MB | User Uploads |
| 🖼 | Screenshot 2026-07-10 at 2.55.13 PM.png | Figure | 562 KB | User Uploads |
| 🖼 | Screenshot 2026-07-10 at 2.54.19 PM.png | Figure | 478 KB | User Uploads |
| 💻 | tcell anergy scene v2 cycles.py | Code | 15 KB | User Uploads |
| 📎 | peptide binding movie.cxc | File | 5 KB | User Uploads |
| 📄 | Hill 2025.pdf | PDF | 2.1 MB | User Uploads |
